PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021852-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 80aa    MW: 9000.06 Da    PI: 9.5652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021852-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-081153344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +l+ +a +++ ++   +W  +a+ +g  ++++++k ++
  AHYPO_021852-RA 11 SWTSKQNKLFEKALAKYDSEtqdRWQMVAKDVG--KSPEEVKRHY 53
                     7*******************************8..9********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-5859IPR001005SANT/Myb domain
SuperFamilySSF466894.65E-121065IPR009057Homeodomain-like
PROSITE profilePS500906.2261057IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-41163IPR009057Homeodomain-like
CDDcd001670.001261853No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MASSSCSSNS SWTSKQNKLF EKALAKYDSE TQDRWQMVAK DVGKSPEEVK RHYDILVRDI  60
KSIENGQVPF PYKSSGRNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-26379280RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679739.11e-37PREDICTED: protein RADIALIS-like 1
RefseqXP_010679740.11e-37PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB88e-28RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0K9R0E34e-39A0A0K9R0E3_SPIOL; Uncharacterized protein
STRINGGLYMA02G06230.12e-29(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-26RAD-like 1